本劇主角進藤光無意中發現了一個古老的圍棋棋盤，而隱藏在其中的血痕竟然只有他看得見。原來那個棋盤是平安時代的棋士．藤原佐為靈魂所暫居的地方，而佐為為了追求「神乎其技」的圍棋技藝，魂魄始終不肯離開棋盤，為的是尋找能與他共鳴的人。
他的願望曾經一度在本因坊秀策身上達成，可惜秀策英年早逝，來不及達到佐為所追求的完美境界，直至遇到小光後，兩人的因緣結合，開始了小光的圍棋生涯。
在偶然的情況下，小光遇到了他生命中的宿敵－塔史亮。在佐為的指導與小亮的刺激之下，小光也漸漸的喜歡上圍棋並且棋藝也日漸精進。
而小亮先是見識到小光（其實是佐為）的棋藝而頭一次嘗試到戒慎恐懼之感，後卻在看過真正的小光的實力後，對小光失望至極。而後發誓不讓進藤光追上！而《棋魂》，就是主角進藤光+藤原佐為與塔史亮在互相的影響與激勵下，一起成長！
感謝漫遊字幕組 乌拉草 翻譯ED:
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